Publications

Featured publications

Metagenomic signatures of extraintestinal bacterial infection in the febrile term infant gut microbiome

March 24, 2025

DeVeaux AL, Hall-Moore C, Shaikh N, Wallace M, Burnham CD, Schnadower D, Kuppermann N, Mahajan P, Ramilo O, Tarr PI, Dantas G, Schwartz DJ. Metagenomic signatures of extraintestinal bacterial infection in the febrile term infant gut microbiome. Microbiome. 2025 Mar 24;13(1):82. doi: 10.1186/s40168-025-02079-w. PMID: 40128855; PMCID: PMC11931804.

Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infants

August 24, 2024

Thänert, Robert, Schwartz, Drew J., Keen, Eric C., Hall-Moore, Carla, Wang, Bin, Shaikh, Nurmohammad, Ning, Jie, Rouggly-Nickless, L. Colleen, Thänert, Anna, Ferreiro, Aura, Fishbein, Skye R.S., Sullivan, Janice E., Radmacher, Paula, Escobedo, Marilyn, Warner, Barbara B., Tarr, Phillip I., Dantas, Gautam, Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infants. Cell Host & Microbe. doi:10.1016/j.chom.2024.07.027.

Gut microbiome and antibiotic resistance effects during travelers’ diarrhea treatment and prevention

December 12, 2023

Blake KS, Schwartz DJ, Paruthiyil S, Wang B, Ning J, Isidean SD, Burns DS, Whiteson H, Lalani T, Fraser JA, Connor P, Troth T, Porter CK, Tribble DR, Riddle MS, Gutiérrez RL, Simons MP, Dantas G. Gut microbiome and antibiotic resistance effects during travelers’ diarrhea treatment and prevention. mBio. 2023 Dec 12:e0279023. doi: 10.1128/mbio.02790-23. Epub ahead of print. PMID: 38085102.

Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial

October 19, 2023

Schwartz DJ, Langdon A, Sun X, Langendorf C, Berthé F, Grais RF, Trehan I, Isanaka S, Dantas G. Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial. Lancet Microbe. 2023 Oct 19:S2666-5247(23)00213-6. doi: 10.1016/S2666-5247(23)00213-6. Epub ahead of print. PMID: 37866373.

Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit

May 3, 2023

Schwartz DJ, Shalon N, Wardenburg K, DeVeaux A, Wallace MA, Hall-Moore C, Ndao IM, Sullivan JE, Radmacher P, Escobedo M, Burnham CD, Warner BB, Tarr PI, Dantas G. Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit. Sci Transl Med. 2023 May 3;15(694):eadg5562. doi: 10.1126/scitranslmed.adg5562. Epub 2023 May 3. PMID: 37134153.

The resistance within: Antibiotic disruption of the gut microbiome and resistome dynamics in infancy

May 11, 2022

Thänert R, Sawhney SS, Schwartz DJ, Dantas G. The resistance within: Antibiotic disruption of the gut microbiome and resistome dynamics in infancy. Cell Host Microbe. 2022 May 11;30(5):675-683. doi: 10.1016/j.chom.2022.03.013. PMID: 35550670.

Recent publications

• Metagenomic signatures of extraintestinal bacterial infection in the febrile term infant gut microbiome
  December 1, 2025
  Metagenomic signatures of extraintestinal bacterial infection in the febrile term infant gut microbiomeDeVeaux, A. L., Hall-Moore, C., Shaikh, N., Wallace, M., Burnham, C. A. D., Schnadower, D., Kuppermann, N., Mahajan, P., Ramilo, O., Tarr, P. I., Dantas, G. & Schwartz, D. J., Dec 2025, In: Microbiome. 13, 1, 82.Research output: Contribution to journal › Article › peer-review
• Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infants
  October 9, 2024
  Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infantsThänert, R., Schwartz, D. J., Keen, E. C., Hall-Moore, C., Wang, B., Shaikh, N., Ning, J., Rouggly-Nickless, L. C., Thänert, A., Ferreiro, A., Fishbein, S. R. S., Sullivan, J. E., Radmacher, P., Escobedo, M., Warner, B. B., Tarr, P. I. & Dantas, G., Oct 9 2024, In: Cell Host and Microbe.Research output: Contribution to journal › Article › peer-review
• Microbiome-Based Diagnostics for Disease: Where Are We Now and Where Are We Headed?
  June 1, 2024
  Microbiome-Based Diagnostics for Disease: Where Are We Now and Where Are We Headed?Yarbrough, M. L., Dumm, R. E., Bry, L., Kelly, B. J., Schwartz, D. & Uberoi, A., Jun 1 2024, In: Clinical chemistry. 70, 6, p. 792-797 6 p.Research output: Contribution to journal › Comment/debate
• Everything but the Kitchen Sink: An Analysis of Bacterial and Chemical Contaminants Found in Syringe Residue from People Who Inject Drugs
  January 1, 2024
  Everything but the Kitchen Sink: An Analysis of Bacterial and Chemical Contaminants Found in Syringe Residue from People Who Inject DrugsWildenthal, J. A., Schwartz, D. J., Nolan, N. S., Zhao, L., Robinson, J. I., Jones, E., Jawa, R., Henderson, J. P. & Marks, L. R., Jan 1 2024, In: Open Forum Infectious Diseases. 11, 1, ofad628.Research output: Contribution to journal › Article › peer-review
• Gut microbiome and antibiotic resistance effects during travelers' diarrhea treatment and prevention
  January 1, 2024
  Gut microbiome and antibiotic resistance effects during travelers' diarrhea treatment and preventionBlake, K. S., Schwartz, D. J., Paruthiyil, S., Wang, B., Ning, J., Isidean, S. D., Burns, D. S., Whiteson, H., Lalani, T., Fraser, J. A., Connor, P., Troth, T., Porter, C. K., Tribble, D. R., Riddle, M. S., Gutiérrez, R. L., Simons, M. P. & Dantas, G., Jan 2024, In: mBio. 15, 1Research output: Contribution to journal › Article › peer-review
• The gut metagenome harbors metabolic and antibiotic resistance signatures of moderate-to-severe asthma
  January 1, 2024
  The gut metagenome harbors metabolic and antibiotic resistance signatures of moderate-to-severe asthmaWilson, N. G., Hernandez-Leyva, A., Schwartz, D. J., Bacharier, L. B. & Kau, A. L., 2024, In: FEMS Microbes. 5, xtae010.Research output: Contribution to journal › Article › peer-review
• Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial
  November 1, 2023
  Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trialSchwartz, D. J., Langdon, A., Sun, X., Langendorf, C., Berthé, F., Grais, R. F., Trehan, I., Isanaka, S. & Dantas, G., Nov 2023, In: The Lancet Microbe. 4, 11, p. e931-e942Research output: Contribution to journal › Article › peer-review
• ENDOGENOUS ENDOPHTHALMITIS CAUSED by GROUP B STREPTOCOCCUS in A HEALTHY, TERM NEONATE
  March 1, 2023
  ENDOGENOUS ENDOPHTHALMITIS CAUSED by GROUP B STREPTOCOCCUS in A HEALTHY, TERM NEONATEO'Bryhim, B. E., Harocopos, G. J., Rajagopal, R., Schwartz, D. J. & Lee, A. R., Mar 1 2023, In: Retinal Cases and Brief Reports. 17, 2, p. 191-194 4 p.Research output: Contribution to journal › Article › peer-review
• Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit
  January 1, 2023
  Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unitSchwartz, D. J., Shalon, N., Wardenburg, K., DeVeaux, A., Wallace, M. A., Hall-Moore, C., Ndao, I. M., Sullivan, J. E., Radmacher, P., Escobedo, M., Burnham, C. A. D., Warner, B. B., Tarr, P. I. & Dantas, G., 2023, In: Science translational medicine. 15, 694, eadg5562.Research output: Contribution to journal › Article › peer-review
• Impact of international travel and diarrhea on gut microbiome and resistome dynamics
  December 1, 2022
  Impact of international travel and diarrhea on gut microbiome and resistome dynamicsBoolchandani, M., Blake, K. S., Tilley, D. H., Cabada, M. M., Schwartz, D. J., Patel, S., Morales, M. L., Meza, R., Soto, G., Isidean, S. D., Porter, C. K., Simons, M. P. & Dantas, G., Dec 2022, In: Nature communications. 13, 1, 7485.Research output: Contribution to journal › Article › peer-review