Featured publications

Metagenomic signatures of extraintestinal bacterial infection in the febrile term infant gut microbiome

March 24, 2025

DeVeaux AL, Hall-Moore C, Shaikh N, Wallace M, Burnham CD, Schnadower D, Kuppermann N, Mahajan P, Ramilo O, Tarr PI, Dantas G, Schwartz DJ. Metagenomic signatures of extraintestinal bacterial infection in the febrile term infant gut microbiome. Microbiome. 2025 Mar 24;13(1):82. doi: 10.1186/s40168-025-02079-w. PMID: 40128855; PMCID: PMC11931804.

Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infants

August 24, 2024

Thänert, Robert, Schwartz, Drew J., Keen, Eric C., Hall-Moore, Carla, Wang, Bin, Shaikh, Nurmohammad, Ning, Jie, Rouggly-Nickless, L. Colleen, Thänert, Anna, Ferreiro, Aura, Fishbein, Skye R.S., Sullivan, Janice E., Radmacher, Paula, Escobedo, Marilyn, Warner, Barbara B., Tarr, Phillip I., Dantas, Gautam, Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infants. Cell Host & Microbe. doi:10.1016/j.chom.2024.07.027.

Gut microbiome and antibiotic resistance effects during travelers’ diarrhea treatment and prevention

December 12, 2023

Blake KS, Schwartz DJ, Paruthiyil S, Wang B, Ning J, Isidean SD, Burns DS, Whiteson H, Lalani T, Fraser JA, Connor P, Troth T, Porter CK, Tribble DR, Riddle MS, Gutiérrez RL, Simons MP, Dantas G. Gut microbiome and antibiotic resistance effects during travelers’ diarrhea treatment and prevention. mBio. 2023 Dec 12:e0279023. doi: 10.1128/mbio.02790-23. Epub ahead of print. PMID: 38085102.

Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial

October 19, 2023

Schwartz DJ, Langdon A, Sun X, Langendorf C, Berthé F, Grais RF, Trehan I, Isanaka S, Dantas G. Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial. Lancet Microbe. 2023 Oct 19:S2666-5247(23)00213-6. doi: 10.1016/S2666-5247(23)00213-6. Epub ahead of print. PMID: 37866373.

Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit

May 3, 2023

Schwartz DJ, Shalon N, Wardenburg K, DeVeaux A, Wallace MA, Hall-Moore C, Ndao IM, Sullivan JE, Radmacher P, Escobedo M, Burnham CD, Warner BB, Tarr PI, Dantas G. Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit. Sci Transl Med. 2023 May 3;15(694):eadg5562. doi: 10.1126/scitranslmed.adg5562. Epub 2023 May 3. PMID: 37134153.

The resistance within: Antibiotic disruption of the gut microbiome and resistome dynamics in infancy

May 11, 2022

Thänert R, Sawhney SS, Schwartz DJ, Dantas G. The resistance within: Antibiotic disruption of the gut microbiome and resistome dynamics in infancy. Cell Host Microbe. 2022 May 11;30(5):675-683. doi: 10.1016/j.chom.2022.03.013. PMID: 35550670.

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